STGPT/meta_value_maps.json at master · A4Bio/STGPT · GitHub

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{
  "n_section": {},
  "tissue": {
    "brain": 1,
    "brain ventricle": 2,
    "breast": 3,
    "colon": 4,
    "corpus callosum": 5,
    "cortical layer II/III": 6,
    "cortical layer V": 7,
    "cortical layer VI": 8,
    "intestine": 9,
    "kidney": 10,
    "liver": 11,
    "lung": 12,
    "lymph node": 13,
    "olfactory region": 14,
    "ovary": 15,
    "pancreas": 16,
    "pia mater": 17,
    "prostate gland": 18,
    "skin of body": 19,
    "spinal cord": 20,
    "striatum": 21,
    "uterus": 22
  },
  "sex": {
    "female": 1,
    "male": 2,
    "unknown": 3
  },
  "celltype": {
    "AC-like": 1,
    "AC-like Prolif": 2,
    "Astrocyte": 3,
    "B cell": 4,
    "CD4 INF": 5,
    "CD4 rest": 6,
    "CD8 EM": 7,
    "CD8 NK sig": 8,
    "CD8 cytotoxic": 9,
    "DC1": 10,
    "DC2": 11,
    "DC3": 12,
    "Endo arterial": 13,
    "Endo capilar": 14,
    "MES-like hypoxia independent": 15,
    "MES-like hypoxia/MHC": 16,
    "Mast": 17,
    "Mono anti-infl": 18,
    "Mono hypoxia": 19,
    "Mono naive": 20,
    "NK": 21,
    "NPC-like OPC": 22,
    "NPC-like Prolif": 23,
    "NPC-like neural": 24,
    "Neuron": 25,
    "Neutrophil": 26,
    "OPC": 27,
    "OPC-like": 28,
    "OPC-like Prolif": 29,
    "Oligodendrocyte": 30,
    "Pericyte": 31,
    "Perivascular fibroblast": 32,
    "Plasma B": 33,
    "Prolif T": 34,
    "Reg T": 35,
    "SMC": 36,
    "SMC COL": 37,
    "SMC prolif": 38,
    "Scavenging endothelial": 39,
    "Scavenging pericyte": 40,
    "Stress sig": 41,
    "T cell": 42,
    "TAM-BDM INF": 43,
    "TAM-BDM MHC": 44,
    "TAM-BDM anti-infl": 45,
    "TAM-BDM hypoxia/MES": 46,
    "TAM-MG aging sig": 47,
    "TAM-MG pro-infl I": 48,
    "TAM-MG pro-infl II": 49,
    "TAM-MG prolif": 50,
    "Tip-like": 51,
    "VLMC": 52,
    "Zero": 53,
    "astrocyte": 54,
    "cDC1": 55,
    "cDC2": 56,
    "cell": 57,
    "endothelial cell": 58,
    "inhibitory interneuron": 59,
    "macrophage": 60,
    "medium spiny neuron": 61,
    "microglial cell": 62,
    "neuron": 63,
    "oligodendrocyte": 64,
    "oligodendrocyte precursor cell": 65,
    "pDC": 66,
    "pericyte": 67,
    "vascular leptomeningeal cell": 68
  },
  "dataset": {
    "10.1126/science.abm1741": 1,
    "10xgenomics alzheimers disease mouse model": 2,
    "10xgenomics human brain": 3,
    "10xgenomics human non diseased pancreas": 4,
    "10xgenomics mouse brain replicates": 5,
    "10xgenomics pancreatic cancer with xenium human": 6,
    "10xgenomics xenium breast cancer": 7,
    "10xgenomics xenium breast cancer add on": 8,
    "10xgenomics xenium colon": 9,
    "10xgenomics xenium colon adenocarcinoma": 10,
    "10xgenomics xenium human skin melanoma": 11,
    "10xgenomics xenium kidney": 12,
    "10xgenomics xenium kidney cancer": 13,
    "10xgenomics xenium lung cancer": 14,
    "10xgenomics xenium lung cancer add on": 15,
    "10xgenomics xenium lung non diseased": 16,
    "10xgenomics xenium lymphnode": 17,
    "Androvic_MERFISH_mouse_brain": 18,
    "BrainAgingSpatialAtlas_MERFISH": 19,
    "MERSCOPE FFPE Human Immuno-oncology HumanBreastCancerPatient1": 20,
    "MERSCOPE FFPE Human Immuno-oncology HumanColonCancerPatient1": 21,
    "MERSCOPE FFPE Human Immuno-oncology HumanColonCancerPatient2": 22,
    "MERSCOPE FFPE Human Immuno-oncology HumanLiverCancerPatient1": 23,
    "MERSCOPE FFPE Human Immuno-oncology HumanLiverCancerPatient2": 24,
    "MERSCOPE FFPE Human Immuno-oncology HumanLungCancerPatient1": 25,
    "MERSCOPE FFPE Human Immuno-oncology HumanLungCancerPatient2": 26,
    "MERSCOPE FFPE Human Immuno-oncology HumanMelanomaPatient1": 27,
    "MERSCOPE FFPE Human Immuno-oncology HumanMelanomaPatient2": 28,
    "MERSCOPE FFPE Human Immuno-oncology HumanOvarianCancerPatient1": 29,
    "MERSCOPE FFPE Human Immuno-oncology HumanOvarianCancerPatient2Slice1": 30,
    "MERSCOPE FFPE Human Immuno-oncology HumanOvarianCancerPatient2Slice2": 31,
    "MERSCOPE FFPE Human Immuno-oncology HumanOvarianCancerPatient2Slice3": 32,
    "MERSCOPE FFPE Human Immuno-oncology HumanProstateCancerPatient1": 33,
    "MERSCOPE FFPE Human Immuno-oncology HumanProstateCancerPatient2": 34,
    "MERSCOPE FFPE Human Immuno-oncology HumanUterineCancerPatient1": 35,
    "MERSCOPE FFPE Human Immuno-oncology HumanUterineCancerPatient2-RACostain": 36,
    "MERSCOPE FFPE Human Immuno-oncology HumanUterineCancerPatient2-ROCostain": 37,
    "amb_p20_2023_mouse_669324": 38,
    "fang_merfish-human_brain": 39,
    "nanostring_cosmx_brain": 40,
    "nanostring_cosmx_human_liver": 41,
    "scilifelab_ISS_Discoviar_healthy_lung": 42,
    "scilifelab_ISS_brain_gbm": 43,
    "scilifelab_Xenium_human_spinal_cord": 44,
    "scilifelab_iss_mouse_eae": 45,
    "scilifelab_xenium_mouse_brain": 46,
    "vizgen_mouse_brain": 47
  },
  "organism": {"Homo sapiens": 1, "Mus musculus": 2}
}