actionet-python/.github/workflows/openblas-action.yml at main · KellisLab/actionet-python · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
name: OpenBLAS ACTION kernels

on:
  pull_request:
    paths:
      - "src/libactionet/**"
      - "src/actionet/action/**"
      - "src/actionet/bindings/wp_action.cpp"
      - "tests/test_action_small_dense_kernels.py"
      - ".github/workflows/openblas-action.yml"
  workflow_dispatch:

jobs:
  action-openblas:
    runs-on: ubuntu-24.04
    strategy:
      fail-fast: false
      matrix:
        threading: [pthread, openmp]

    env:
      OMP_NUM_THREADS: "8"
      OPENBLAS_NUM_THREADS: "32"
      ACTIONET_RUN_OPENBLAS_SMOKE: "1"
      LD_LIBRARY_PATH: /usr/lib/x86_64-linux-gnu/openblas-${{ matrix.threading }}

    steps:
      - uses: actions/checkout@v4
        with:
          submodules: recursive

      - uses: actions/setup-python@v5
        with:
          python-version: "3.12"
          cache: pip

      - name: Install native dependencies
        run: |
          sudo apt-get update
          sudo apt-get install -y libhdf5-dev libopenblas-${{ matrix.threading }}-dev

      - name: Build against selected OpenBLAS variant
        env:
          CMAKE_ARGS: >-
            -DBLA_VENDOR=OpenBLAS
            -DBLAS_openblas_LIBRARY=/usr/lib/x86_64-linux-gnu/openblas-${{ matrix.threading }}/libopenblas.so
            -DLIBACTIONET_OPENMP_RUNTIME=GNU
        run: |
          python -m pip install --upgrade pip
          python -m pip install . pytest

      - name: Verify resolved BLAS and OpenMP linkage
        run: |
          extension=$(python -c 'from actionet import _core; print(_core.__file__)')
          ldd "$extension"
          ldd "$extension" | grep -q 'openblas'
          resolved=$(ldd "$extension" | awk '/openblas/ {print $3; exit}')
          readlink -f "$resolved" | grep -q 'openblas-${{ matrix.threading }}'
          ldd "$extension" | grep -q 'libgomp'

      - name: Run ACTION correctness and catastrophic-regression tests
        run: python -m pytest -q tests/test_action_small_dense_kernels.py