It would be a bit easier to evaluate results if numberAntibodySeq did not output numbers for gaps during the investigation. An example of affected diff file:
$ cat diffs/homo_sapiens/kabat/light/5t6l.diff
- 1 <
- 10 <
> S 108
> Q 109
If numbers 1 and 10 (obviously for gaps) were not printed, diff file would be much shorter. If ANARCI numbers gaps as well, maybe it is worth to grep out the lines starting with - before comparing with sequences from PDB files? PDB files will not provide us numbers for gaps, thus diff files will contain less noise.
It would be a bit easier to evaluate results if
numberAntibodySeqdid not output numbers for gaps during the investigation. An example of affected diff file:If numbers 1 and 10 (obviously for gaps) were not printed, diff file would be much shorter. If ANARCI numbers gaps as well, maybe it is worth to grep out the lines starting with
-before comparing with sequences from PDB files? PDB files will not provide us numbers for gaps, thus diff files will contain less noise.