Description of the bug
In the nf-core/hic command, I specify which bin size I would like to use. However, the program continues to run with the default settings.
Command used and terminal output
nextflow run nf-core/hic --input /home/andrea_perreault4/data/sample_863.csv --outdir /home/andrea_perreault4/data/MCF7/863-output_v2 -profile docker –-bins_size '10000,5000' --genome GRCh38 --digestion mboi
Relevant files
Screenshot of parameters, with bin size near the bottom.
System information
Nextflow version 24.10.5
nf-core/hic version v2.1.0
Docker container
Local executor on a Linux machine
Description of the bug
In the nf-core/hic command, I specify which bin size I would like to use. However, the program continues to run with the default settings.
Command used and terminal output
nextflow run nf-core/hic --input /home/andrea_perreault4/data/sample_863.csv --outdir /home/andrea_perreault4/data/MCF7/863-output_v2 -profile docker –-bins_size '10000,5000' --genome GRCh38 --digestion mboiRelevant files
Screenshot of parameters, with bin size near the bottom.
System information
Nextflow version 24.10.5
nf-core/hic version v2.1.0
Docker container
Local executor on a Linux machine