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    16 repositories

    • NCBI_fungi

      Public
      Download NCBI fungi and process for stats
      Python
      •0•0•0•0•Updated Jun 20, 2026Jun 20, 2026

    • FunAnnotationCommon

      Public
      Funannotate quick annotation
      Shell
      •0•0•0•0•Updated May 19, 2026May 19, 2026

    • Fungi_1k

      Public
      Fungi1k dataset analysis
      Python
      •1•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • 1kfg_phylo_paper

      Public
      1000 Fungal Genomes Phylogeny and phylogenomics paper
      Shell
      •1•0•0•0•Updated Dec 13, 2023Dec 13, 2023

    • 1kfg.github.io

      Public
      1000 Fungal Genomes Project
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •442•0•0•0•Updated Mar 17, 2023Mar 17, 2023

    • 2019_dataset

      Public
      Try again creating frozen dataset
      Python
      •0•0•0•0•Updated Mar 23, 2021Mar 23, 2021

    • PHYling_HMMs_fungi

      Public
      PHYling HMM datasets for Fungi
      MIT License
      •1•1•0•0•Updated May 18, 2020May 18, 2020

    • Phylogenomics_HMMs

      Public
      HMMs for Phylogenomics projects
      MIT License
      •1•0•0•0•Updated Sep 11, 2018Sep 11, 2018

    • Phylogenomics

      Public
      Phylogenomics analyses for 1KFG project
      bioinformaticscomparative-genomicsphylogenomics
      bioinformaticscomparative-genomicsphylogenomics
      Shell
      •
      MIT License
      •0•6•0•0•Updated Nov 16, 2017Nov 16, 2017

    • analyses

      Public
      1KFG analyses
      Shell
      •0•1•0•0•Updated Jul 3, 2017Jul 3, 2017

    • genome_stats

      Public
      Summary Statistics about fungal genomes
      Perl
      •2•3•0•0•Updated May 16, 2017May 16, 2017

    • Freeze1_Phylogenomics

      Public
      Freeze of 351 genome set for first 1KFG genome paper
      0•0•0•0•Updated Jan 16, 2017Jan 16, 2017

    • genome_sizes

      Public
      Fungal Genome Sizes
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 31, 2016Oct 31, 2016

    • annotate_genomes

      Public
      Genome annotation for unannotated projects
      Shell
      •0•1•1•0•Updated Jul 25, 2016Jul 25, 2016

    • AFTOL_resources

      Public
      Resources related to AFTOL1 and AFTOL2 projects
      MIT License
      •1•1•0•0•Updated Jul 19, 2015Jul 19, 2015

    • outgroups

      Public
      Outgroups genomes and data
      0•0•0•0•Updated Jun 3, 2015Jun 3, 2015
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