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    336 repositories

    • cli

      Public
      brainlife.io Command Line Interface (CLI)
      todo
      todo
      JavaScript
      •
      MIT License
      •7•3•21•3•Updated Jul 31, 2026Jul 31, 2026

    • docs

      Public
      Brainlife.io Documentation
      documentationneuroscienceeducational
      documentationneuroscienceeducationalneuroimagingbrainlife
      HTML
      •29•19•19•2•Updated Jul 9, 2026Jul 9, 2026

    • abcd-novnc

      Public
      Service to launch noVNC session with specified docker container
      JavaScript
      •0•0•4•0•Updated Jul 7, 2026Jul 7, 2026

    • app-FSLBET

      Public
      Brain Extraction via FSL's BET command
      anatomy-preprocessing
      anatomy-preprocessing
      Shell
      •1•0•2•0•Updated Jul 3, 2026Jul 3, 2026

    • ui-mrview

      Public
      MRView / noVNC docker container used by brain-life UI
      Shell
      •1•0•0•0•Updated Jul 3, 2026Jul 3, 2026

    • ui-niivue

      Public
      JavaScript
      •0•1•1•0•Updated Jun 13, 2026Jun 13, 2026

    • brainlife.hugo

      Public
      Brainlife Hugo Setup
      HTML
      •7•1•0•1•Updated May 28, 2026May 28, 2026

    • ezbids

      Public
      A web service for semi-automated conversion of raw imaging data to BIDS
      webdicominteroperability
      webdicominteroperabilitymrineuroimagingbidsniftibrain-imagingdata-curationbids-converter
      Vue
      •
      MIT License
      •21•32•22•8•Updated May 20, 2026May 20, 2026

    • pybrainlife

      Public
      Library to access brainlife.io data objects and jupyter notebooks
      python3jupyterlabjupyter-notebooks
      python3jupyterlabjupyter-notebooksbrainlifeio
      Python
      •1•7•1•2•Updated May 18, 2026May 18, 2026

    • ezbids-binaries

      Public
      Shell
      •0•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • app-archive-secondary

      Public
      Secondary output archiver
      Python
      •0•0•1•0•Updated Mar 20, 2026Mar 20, 2026

    • app-archive

      Public
      App responsible for archiving output datasets (experimental)
      Python
      •
      MIT License
      •0•1•0•1•Updated Mar 20, 2026Mar 20, 2026

    • app-noop

      Public
      Service that does nothing (exist to do inter-resource transfer)
      Shell
      •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

    • app-stage

      Public
      App used to stage datasets from archive
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 21, 2026Jan 21, 2026

    • dockerfiles

      Public
      repository to store various dockerfiles used to build docker containers that are used across multiple brainlife apps
      Dockerfile
      •1•3•2•0•Updated Jan 19, 2026Jan 19, 2026

    • app-qsiprep

      Public
      Preprocessing of diffusion MRI data. It includes automatically generated preprocessing pipelines that correctly group, distortion correct, motion correct, denoi…
      pipelinepreprocessing
      pipelinepreprocessing
      Python
      •
      MIT License
      •9•3•2•0•Updated Nov 13, 2025Nov 13, 2025

    • amaretti

      Public
      Lightweight task orchestration service for ABCD-specification compatible apps.
      JavaScript
      •
      MIT License
      •4•7•18•12•Updated Nov 5, 2025Nov 5, 2025

    • warehouse

      Public
      Service that allows data warehousing and workfow orchestration
      CSS
      •
      MIT License
      •13•15•0•25•Updated Nov 5, 2025Nov 5, 2025

    • abcd-spec

      Public
      Application for Big Computational Data Specification (v1.1). This specification provide information on how to write an Application that can run on the open plat…
      specificationcloud-computingbrain
      specificationcloud-computingbrainbiomedical-image-processinghcpcyberinfrastructure
      Python
      •
      MIT License
      •8•12•5•1•Updated Oct 28, 2025Oct 28, 2025

    • app-benson14-retinotopy

      Public
      Brainlife.io app for Noah Benson's neuropythy library, retinotopy from T1 anatomy
      Shell
      •
      MIT License
      •6•1•0•1•Updated Oct 14, 2025Oct 14, 2025

    • validator-tif

      Public
      Python
      •1•0•0•0•Updated Sep 30, 2025Sep 30, 2025

    • ga-launcher

      Public
      Group Analysis container Launcher (experimental)
      Shell
      •2•1•1•0•Updated Sep 29, 2025Sep 29, 2025

    • auth

      Public
      Simple, generic authentication service API and UI that issues JWT token
      jwtauthentication
      jwtauthentication
      JavaScript
      •
      MIT License
      •2•1•13•4•Updated Sep 18, 2025Sep 18, 2025

    • event

      Public
      Simple Event Service (AMQP > WebSocket gateway)
      JavaScript
      •3•0•2•6•Updated Sep 4, 2025Sep 4, 2025

    • app-FSLTopupEddy

      Public
      This app will correct for encoding, eddy currents, and motion artifacts using FSL's Topup and Eddy functions.
      preprocessing
      preprocessing
      Shell
      •2•1•0•1•Updated Jun 9, 2025Jun 9, 2025

    • app-fsl-anat

      Public
      Shell
      •0•1•0•0•Updated Jun 6, 2025Jun 6, 2025

    • ants-docker

      Public
      Dockerfile for ANTs 2.3.1 via Conda + HCP pipelines + MNI templates
      Dockerfile
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • validator-psoct

      Public
      Python
      •1•0•0•0•Updated Apr 8, 2025Apr 8, 2025

    • app-fmriprep

      Public
      fMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interf…
      fmripreprocessing
      fmripreprocessing
      Shell
      •
      MIT License
      •10•3•11•1•Updated Mar 31, 2025Mar 31, 2025

    • app-ensembletracking

      Public
      This App creates a large set of candidate streamlines using an ensemble of algorithms and parameter values. All outputs will be then combined into a single trac…
      tracking
      tracking
      Shell
      •1•0•6•0•Updated Mar 24, 2025Mar 24, 2025
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