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@qiime2 QIIME 2

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    82 repositories

    • library

      Public
      A website for sharing QIIME 2 Plugins
      Svelte
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•3•2•Updated Aug 2, 2026Aug 2, 2026

    • distributions

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•6•5•3•Updated Aug 2, 2026Aug 2, 2026

    • homepage

      Public
      QIIME 2 Homepage
      Astro
      •
      MIT License
      •0•0•0•2•Updated Jul 31, 2026Jul 31, 2026

    • q2view

      Public
      A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •3•1•2•0•Updated Jul 30, 2026Jul 30, 2026

    • q2-feature-table

      Public
      QIIME 2 plugin supporting operations on feature tables.
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •41•2•23•2•Updated Jul 30, 2026Jul 30, 2026

    • q2-taxa

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •31•3•41•0•Updated Jul 30, 2026Jul 30, 2026

    • amplicon-docs

      Public
      Source for QIIME 2 amplicon documentation.
      Makefile
      •2•3•5•0•Updated Jul 23, 2026Jul 23, 2026

    • moving-pictures-tutorial

      Public
      Moving Pictures Tutorial source
      Makefile
      •2•0•0•0•Updated Jul 23, 2026Jul 23, 2026

    • gut-to-soil-tutorial

      Public
      The gut-to-soil axis microbiome analysis tutorial
      Makefile
      •6•1•3•0•Updated Jul 23, 2026Jul 23, 2026

    • q2cli

      Public
      Command line interface for QIIME 2
      hacktoberfestq2interface
      hacktoberfestq2interface
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •29•20•12•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-diversity-lib

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •13•0•6•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-types

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •45•17•26•1•Updated Jul 21, 2026Jul 21, 2026

    • q2-stats

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•1•4•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-quality-control

      Public
      A QIIME 2 plugin for quality control of sequence and feature data
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •16•4•7•0•Updated Jul 21, 2026Jul 21, 2026

    • q2

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-sapienns

      Public
      hacktoberfestqiime2-plugin
      hacktoberfestqiime2-plugin
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•1•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-longitudinal

      Public
      QIIME 2 plugin for paired sample comparisons
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•9•28•1•Updated Jul 21, 2026Jul 21, 2026

    • q2-fragment-insertion

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•14•11•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-sample-classifier

      Public
      QIIME 2 plugin for machine learning prediction of sample data.
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •36•6•15•0•Updated Jul 21, 2026Jul 21, 2026

    • q2templates

      Public
      Design template package for QIIME 2 Plugins
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •15•4•0•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-alignment

      Public
      Support for multiple sequence alignment in QIIME 2.
      hacktoberfest
      hacktoberfest
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •23•2•6•1•Updated Jul 21, 2026Jul 21, 2026

    • q2-emperor

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•1•4•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-metadata

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•3•6•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-phylogeny

      Public
      Phylogenetic reconstruction, and operations on phylogenetic trees.
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •20•5•2•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-quality-filter

      Public
      Quality filtering for QIIME2
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •14•1•3•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-feature-classifier

      Public
      QIIME 2 plugin supporting taxonomic classification
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •40•20•9•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-cutadapt

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•4•4•1•Updated Jul 21, 2026Jul 21, 2026

    • q2-dada2

      Public
      QIIME 2 plugin wrapping DADA2
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •42•24•8•3•Updated Jul 21, 2026Jul 21, 2026

    • q2-vizard

      Public
      The first choice of wizard lizards for interactive, generalized microbiome data visualization!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •13•1•6•0•Updated Jul 21, 2026Jul 21, 2026

    • q2-demux

      Public
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •20•1•9•1•Updated Jul 21, 2026Jul 21, 2026
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