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    13 repositories

    • morphOMICs_New

      Public
      morphOMICs is a topological data analysis approach which combines the Topological Morphology Descriptor (TMD) with bootstrapping approach, dimensionality reduct…
      Python
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated May 12, 2025May 12, 2025

    • morphOMICs

      Public
      morphOMICs is a topological data analysis approach which combines the Topological Morphology Descriptor (TMD) with bootstrapping approach, dimensionality reduct…
      Python
      •
      GNU General Public License v3.0
      •6•6•4•0•Updated May 12, 2025May 12, 2025

    • RGC-Quant

      Public
      Retinal Ganglion Cell (RGC) automatic counting in 3D confocal images using Deep Learning
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • MorphOMICs_legacy

      Public archive
      Topological data analysis tool to map microglia morphology along sex- and brain-region-specific spectra
      Python
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Mar 19, 2024Mar 19, 2024

    • Data-Manager

      Public
      A web application which could efficiently store and search data, whilst also incorporating annotation features
      Python
      •0•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • RHD_Electrophysiology

      Public
      Scripts and codes for conversion, preprocessing, and postprocessing of electrophysiology data recorded using RHD devices
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 6, 2024Mar 6, 2024

    • V1_morphOMICs

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 8, 2023May 8, 2023

    • Electrophysiology

      Public
      0•0•0•0•Updated Feb 24, 2023Feb 24, 2023

    • Kilosort3

      Public
      Fast spike sorting with drift correction for up to a thousand channels
      MATLAB
      •
      GNU General Public License v2.0
      •292•0•0•0•Updated Jan 23, 2023Jan 23, 2023

    • scvi-tools

      Public
      Deep probabilistic analysis of single-cell omics data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •473•0•0•0•Updated Jan 23, 2023Jan 23, 2023

    • TMD

      Public
      A python package for the topological analysis of neurons.
      Python
      •
      Other
      •23•0•0•0•Updated Nov 14, 2022Nov 14, 2022

    • umap

      Public
      Uniform Manifold Approximation and Projection
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •862•0•0•0•Updated Nov 11, 2022Nov 11, 2022

    • ripser

      Public
      Ripser: efficient computation of Vietoris–Rips persistence barcodes
      C++
      •
      MIT License
      •91•0•0•0•Updated Nov 6, 2022Nov 6, 2022
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