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@sysbio-vo Systems Biology Virtual Lab

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    34 repositories

    • pannotator

      Public
      Fast prokaryotic genomes annotation
      Python
      •
      MIT License
      •1•4•0•2•Updated Jul 23, 2026Jul 23, 2026

    • pannotator-helpers

      Public
      Groovy helper functions for Pannotator
      MIT License
      •0•0•0•0•Updated Jul 7, 2026Jul 7, 2026

    • bakta

      Public
      Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
      Python
      •
      GNU General Public License v3.0
      •83•1•0•0•Updated Jul 2, 2026Jul 2, 2026

    • metasub-kyiv-eda

      Public
      MetaSUB Kyiv data analysis
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • DBG-GNN

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 23, 2025Jan 23, 2025

    • metagenomics-normalisation

      Public
      Benchmarking metagenomics normalisation methods
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 30, 2024May 30, 2024

    • ung-cloud

      Public
      Scripts, configurations, and more, related to UNG grid/cloud infrastructure.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 7, 2023Dec 7, 2023

    • article-ptic-suppl

      Public
      Supplementary material for PTIC article
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 9, 2023Jun 9, 2023

    • ptic

      Public
      PTIC method
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 9, 2023Jun 9, 2023

    • article-scplacenta-suppl

      Public
      Supplement
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 21, 2023Feb 21, 2023

    • plasm

      Public
      PLAcenta Single-cell Map
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 21, 2023Feb 21, 2023

    • smkn-placenta

      Public
      Some placenta single-cell analysis
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 15, 2022Aug 15, 2022

    • sysbio-vo.github.io

      Public
      New jekyll based site
      CSS
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 28, 2022Jun 28, 2022

    • sysbio-website

      Public
      SysBio lab website, bootstrap based.
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 26, 2022Jan 26, 2022

    • dimploma-stas-kek

      Public
      The one and only diploma project implemented by my best student everrrrr
      Rust
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated May 27, 2021May 27, 2021

    • placenta-rnaseq

      Public
      Placenta RNA-seq data integration
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 24, 2021May 24, 2021

    • grn-tools-benchmark

      Public
      GRN tools benchmark
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 10, 2021Mar 10, 2021

    • sysbio-course

      Public
      Systems Biology Course
      Makefile
      •0•2•0•0•Updated May 15, 2019May 15, 2019

    • cloud-user-docs

      Public
      33•1•0•0•Updated Mar 31, 2019Mar 31, 2019

    • article-fractalkine-suppl

      Public
      Supplement for CX3CL1 paper
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 22, 2019Jan 22, 2019

    • article-statin-suppl

      Public
      Supplement for statin article
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 10, 2019Jan 10, 2019

    • bnfinder

      Public
      BNFinder - tool for learning bayesian networks
      Python
      •
      GNU General Public License v2.0
      •9•51•1•0•Updated Oct 19, 2018Oct 19, 2018

    • article-bnf-suppl

      Public
      Supplement for BNFinder article
      R
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Oct 19, 2018Oct 19, 2018

    • article-placenta-grn-suppl

      Public
      Integrative analysis of Human placenta gene expression profiles
      R
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Apr 22, 2018Apr 22, 2018

    • netbenchmark

      Public
      This package implements a benchmarking of several gene network inference algorithms from gene expression data
      R
      •
      Other
      •2•0•0•0•Updated Jan 28, 2018Jan 28, 2018

    • placenta-macrophages

      Public
      Placenta Macrophages
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 14, 2017Nov 14, 2017

    • article-microarrays

      Public
      Direct integration of microarray data — R scripts for comparing different microarray annotations and probesets selection for cross-platform direct data integrat…
      R
      •
      GNU General Public License v3.0
      •5•5•0•0•Updated Aug 1, 2017Aug 1, 2017

    • old.sysbio-vo.github.io

      Public
      Web page for Systems Biology Lab
      CSS
      •
      MIT License
      •2•1•0•1•Updated Jul 24, 2017Jul 24, 2017

    • camda-metasub

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 22, 2017Jul 22, 2017

    • snail

      Public
      Spark Nucleotide mAchIne Learning
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 13, 2017Jun 13, 2017
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