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Achievement: Pair Extraordinairex2Achievement: YOLOAchievement: Pull Sharkx3Achievement: Quickdraw

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compbiolover/README.md

Andrew Willems

Bioinformatics scientist working in pediatric cancer genomics.
I build genomic visualization and analysis tools, and develop civic-technology projects focused on housing transparency and walkability.

Areas of work

  • Genomics tooling — interactive visualization and analysis platforms for cancer genomics, including ProteinPaint and GRIN2
  • Performance engineering — porting computational hot paths to Rust, caching, and optimizing large-scale data visualization
  • Civic technology — housing-transparency and urbanism tools for Memphis, including housinglabel.dev
  • Statistical methods, database design, and data visualization

Technologies

Python TypeScript Rust D3.js R

Current focus

  • Developing housinglabel.dev and related housing-transparency tools
  • Working with infrastructure and urbanism data for Memphis, including sidewalk-gap and walkability analysis

Contact

GitHub stats Top languages

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  1. CCSinglecell CCSinglecell Public

    A project focused on using single-cell RNA sequencing data (scRNA-seq) and pseudo time to improve colon cancer diagnosis and outcomes.

    R 9 2

  2. sclc sclc Public

    Attempting to elucidate the subtypes of EMT in small cell lung cancer and connect those subtypes to relevant clinical outcomes

    R

  3. rett_syndrome rett_syndrome Public

    Analysis of various genetic backgrounds to help elucidate aspects of Rett syndrome

    R

  4. stavis1/peakPickingTransformer stavis1/peakPickingTransformer Public

    A transformer model for targeted LC-MS XIC peak picking

    Python

  5. chabc chabc Public

    ChABC Project

  6. housing-nutrition-label housing-nutrition-label Public

    Generating a nutrition-like label for housing

    Python