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@EpigenomeInformatics

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igunduz/README.md

I'm the developer/maintainer of the following software:

💻 Software Contributions

Package Version Role BioC-release Info
deconvR Developer/Maintainer Simulation and Deconvolution of Omic Profiles
methylTFR Developer/Maintainer Quantification of DNA Methylation Patterns in TFBS
ChrAccR Contributor/Co-developer – R package for comprehensive analysis of bulk and single-cell chromatin accessibility data
ARTEMIS Developer/Maintainer – Python package for Attention-based Regulatory Transcription Factor Explanation from Methylation Interaction Signatures

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  1. BIMSBbioinfo/deconvR BIMSBbioinfo/deconvR Public

    The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.

    R 10 3

  2. LLMRS LLMRS Public

    LLMRS: Unlocking Potentials of LLM-Based Recommender Systems

    Jupyter Notebook 1

  3. Single-Cell-Bioinformatics-Book Single-Cell-Bioinformatics-Book Public

    Single Cell Technologies and Methodologies

    TeX

  4. EpigenomeInformatics/methylTFR EpigenomeInformatics/methylTFR Public

    Quantification of DNA Methylation Signatures in Transcription Factor Binding Sites

    R 3

  5. EpigenomeInformatics/ChrAccR EpigenomeInformatics/ChrAccR Public

    Analyzing chromatin accessibility data in R

    R 1