feat(config): move from hydra to pydantic models - #1221

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project-defiant wants to merge 9 commits into

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Commits on Apr 24, 2026

feat: add claude.md
SzymonSzyszkowski
committed
5115a3f
feat: add SessionDefaults Pydantic model, migrate config to package

SzymonSzyszkowski
and
claude
committed
93ed7db
fix: correct import ordering in config package

SzymonSzyszkowski
and
claude
committed
38c9ae4
refactor: move biosample_index config to co-located Pydantic model

SzymonSzyszkowski
and
claude
committed
753b18d
refactor: move colocalisation config to co-located Pydantic model

SzymonSzyszkowski
and
claude
committed
2399fda
refactor: migrate 7 remaining steps to Pydantic config pattern

SzymonSzyszkowski
and
claude
committed
49e9102

Commits on Apr 25, 2026

refactor: migrate 20 remaining steps to Pydantic config pattern

SzymonSzyszkowski
and
claude
committed
7709e74

Commits on Apr 27, 2026

fix: address PR review - fix mutable defaults and constrain colocalisation_method

Copilot
and
project-defiant
authored
43e2c16

Commits on May 12, 2026

refactor(config): migrate configuration to pydantic
project-defiant
authored
1a05e79