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    13 repositories

    • tttrkit

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 28, 2026Jul 28, 2026

    • Buchel_2025

      Public
      Construct FLIM image from .ptu files
      Jupyter Notebook
      •0•0•0•0•Updated Jun 15, 2026Jun 15, 2026

    • biapls-dl-materials

      Public
      Materials for day 3 afternoon session of Intro to BioImaging Analysis with Python for Life Scientists course
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 8, 2026Jun 8, 2026

    • Pacior2025

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 29, 2026May 29, 2026

    • scripts_and_macros

      Public
      Useful scripts and macros in various programming languages
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Mar 19, 2026Mar 19, 2026

    • FLOPA

      Public
      FLOPA is a python based tool for FLIM data opening, processing and analysis. Planned as Napari plugin/widget.
      pythonphasorflim
      pythonphasorflimbioimagingnapari
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•3•0•Updated Mar 17, 2026Mar 17, 2026

    • PAPI

      Public
      PAPI (Python for Analysis and Processing of Images) - Python course
      Jupyter Notebook
      •1•0•0•0•Updated Feb 7, 2026Feb 7, 2026

    • .github

      Public
      0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

    • Tavakoli2022

      Public
      The project measures axonal growth speed and direction during development. Conducted at IMCF Biocev in collaboration with Mitra Tavakoli, Institute of Biotechno…
      neurosciencelive-cell-imagingaxons
      neurosciencelive-cell-imagingaxons
      Jupyter Notebook
      •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

    • Virus-Infection-Analysis-Workflow

      Public
      This project aims to analyze the early infection (LT signal) and late expression (VP1) after infection with HBdMEC BK virus. The goal is to quantify the amount …
      virusmicroscopybioimage-analysis
      virusmicroscopybioimage-analysis
      Jupyter Notebook
      •0•0•0•0•Updated May 30, 2023May 30, 2023

    • NNBA-2023

      Public
      The lectures' and practicals' materials for the Neural Networks in Bioimage Analysis course at IMCF Biocev, 2023
      machine-learningdeep-learningneural-networks
      machine-learningdeep-learningneural-networkslecture
      Jupyter Notebook
      •0•0•1•0•Updated May 7, 2023May 7, 2023

    • Brustikova2022

      Public
      The project aims to measure the differences of viral particles distribution in the cell nucleus
      Jupyter Notebook
      •0•0•0•0•Updated Jan 25, 2023Jan 25, 2023

    • Simonik2022

      Public
      The project aims to measure and analyse the change of angle between cell and sperm cell during their interaction.
      Jupyter Notebook
      •0•0•0•0•Updated Jun 30, 2022Jun 30, 2022
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