Code to analyze the sequencing data and replicate the results of:
S. Ruiz-Pérez, N. Alcaraz, K. Torres-Arciga, J. A. Ocampo-Cervantes, A. Cervera, C. Castro-Hernández, C. G. Sámano-Salazar, E. Soto-Reyes, R. González-Barrios, Retrotransposon Expression Is Upregulated in Adulthood and Suppressed during Regeneration of the Limb in the Axolotl (Ambystoma mexicanum). Advanced Biology 2025, e00502. https://doi.org/10.1002/adbi.202400502
The complete bioinformatic pipeline is described in axoloTE_main_rev.Rmd. Accesory scripts can be found in the scripts/ subdirectory.