pGlyco is a software tool dedicated for the analysis of intact glycopeptides/glycoproteins using mass spectrometry.

A library for describing the structure of glycopeptides

🐍 Open-Source Software for the semi-automated analysis of glycopeptide mass spectrometry data

This is a Java stand-alone tool for the quantitation of glyco sites. It calculates the proportion of different glyco-PTMs in a protein of interest. It supports data from IP2 (quant compare output files) and MaxQuant.

InterVenn Biosciences is a digital-biology company applying artificial intelligence and mass spectrometry to glycoproteomics, the large-scale study of glycosylated proteins, to discover novel biomarkers for precision medicine.

3D implementation of The Symbol Nomenclature For Glycans (SNFG) for UCSF Chimera

Tutorials for Glycoproteomic Data Analysis using R and Python.

Generate proteoforms from a list of glycopeptides.

It assigns the phosphorylation site in protein

Data and code needed to recreate plots for manuscript doi.org/10.1021/jasms.2c00249.

Systematic Quantification of Protein O-GlcNAcylation under N-Glycosylation Inhibition

Find glycopeptide peptide sequences in protein FASTA files.

Neo4j Glycoproteomics Graph Tool for storing glycopeptide records.

Python tool for annotating MS/MS spectra of glycopeptides with EThcD support and false match rate calculation

Utilities for mzML mass spectrometry file processing, fragment ion calculation, and peak matching