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biranjan01 / neopeptide

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🧬 NeoPeptide — Automated 15-step neoantigen vaccine prediction pipeline for cancer immunotherapy research. Docker-based (Next.js + FastAPI). MHC-I/II binding (NetMHCpan), B-cell epitopes (BepiPred), antigenicity (VaxiJen), toxicity (ToxinPred), population coverage. Handles 500K+ peptides with chunked IEDB processing. Developed by Ravi & S. Shriya.

docker bioinformatics nextjs computational-biology immunoinformatics epitope-prediction vaccine-design neoantigen fastapi cancer-immunotherapy iedb mhc-binding
  • Updated Aug 1, 2026
  • Gnuplot

samavinasir / proteoannot

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Standalone Python package for annotating protein sequences with biological and physicochemical properties (iFeature, IEDB, SignalP) for reverse vaccinology. Extracted from VacSol-ML(ESKAPE); supports multi-allele MHC-I/II epitope prediction. Provides both a Python API and a CLI

machine-learning bioinformatics machine-learning-algorithms proteomics signal-peptides bioinformatics-analysis python-package epitope-prediction-methods protein-annotation bioinformatics-tool epitope-prediction vaccine-design reverse-vaccinology mhc-binding-prediction protein-annotations proteomics-data-analysis signal-peptide iedb ifeature signal-peptide-detection
  • Updated Jul 30, 2026
  • Python

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