introns

Gene prediction using empirically determined introns

This pipeline infers exon functional annotations using coordinates from a .gff file and derives corresponding intron coordinates along with relevant annotations. Users can optionally specify the length of intronic fragments to extract. The pipeline is suited for splicing code analyses.

A Python-based bioinformatics project that performs DNA sequence analysis including nucleotide mutation conversion, DNA to RNA transcription, mRNA translation into amino acids, AT content calculation, and exon-intron splicing operations.

A database of introns and alternative splicing events across human tissues

Creating so called sequence logos for UTRs and introns of genes in the human genome

A tool to determine locations of potential novel intronic splicing

Scripts used to prepare the "Self-splicing introns in genes of Bastillevirinae bacteriophages" paper

Working with genomic introns

Manuscript data and code repository

Intron mapping for genes linked to psychiatric disorders from Cell 2025 MPRA & CROP-seq data