perturbation-biology

Here are 3 public repositories matching this topic...

samuelbharti / tahoe-explorer

Shiny app for exploring Tahoe-100M single-cell perturbation metadata and building reproducible subsets

bioinformatics r shiny data-visualization rstats parquet transcriptomics single-cell shiny-app duckdb huggingface-datasets bslib perturbation-biology tahoe-100m

Updated Aug 15, 2026
R

Jiawei-Xing / PerturbAgent

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Adversarial-debate LLM agent for predicting CRISPRi perturbation effects on gene expression (Genentech MLGenX BioReasoning Challenge)

bioinformatics computational-biology gene-expression kaggle-competition crispri vllm llm-agents agentic-ai perturbation-biology

Updated Jul 21, 2026
Python

samuel-miner / crispr-perturbation-manifold-benchmarks

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Framework and results for CRISPR perturbation prediction benchmarks, extending the Nature Methods setting with LSFT, LOGO, and single-cell transfer analysis.

benchmarking computational-biology gene-expression pca crispr single-cell nih perturbation-biology

Updated Mar 2, 2026
Python

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